The BNMA BN Repository

This repository is a resource for posting and downloading Bayesian network models for sharing with others and for providing supporting material for publications. Please respect authors' rights where noted.

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10 BNs found.

SpiegelhalterDLC93

A 20 node example of a belief net for medical diagnosis. This file does not contain the numerical probabilities (except those few given in the paper). This, together with the paper, provide a good worked out example for clique tree (i.e. join tree) compiling and propagation.

Paper link: <www.norsys.com...>

Norsys Software Corp
Netica .dne format
Spiegelhalter, D.J., Dawid, A.P., Lauritzen, S.L. & Cowell, R.G. (1993) Bayesian Analysis in Expert Systems. Statist. Sci., 8(3):219-247, The Institute of Mathematical Statistics
Pathfinder

An expert system that assists surgical pathologists with the diagnosis of lymph-node diseases.

Paper link: <www.norsys.com...>

Norsys Software Corp
Netica .dne format
Medicine
Neapolitan90

From the book Neapolitan, Richard E. (1990) Probabilistic Reasoning in Expert Systems: Theory and Algorithms, John Wiley & Sons, New York, p. 259. Started as problem 5.5.2, p.183, it becomes example 7.5, p. 261 (with diagram on p. 259), and continues numerically on p. 279. Originally based on the Lauritzen & Spiegelhalter 1988 paper.

BN link: <www.norsys.com...>

Norsys Software Corp
Netica .dne format
Neapolitan, R.E. (1990) Probabilistic Reasoning in Expert Systems: Theory and Algorithms. , John Wiley \& Sons, Inc.
Neopolitan example
Bull Trout Food Web

This model illustrates potential food web and species interaction dynamics related to interactions between bull trout (Salvelinus confluentus) and anadromous salmonid fish existing in the same river system. (Explanation of nodes: small bull trout = at least juveniles and possibly resident adults; terrestrial wildlife predators = some amphibians, reptiles, birds, and mammals; juvenile [juv.] anadromous salmonids eaten = average annual percentage of total juvenile anadromous salmonids that are consumed by fish and other predators; juvenile anadromous salmonids = parr to smolt stages, although some bull trout predation on eggs also occurs; popn = population; anadromous reproduction = number of offspring [embryos] produced by spawning adult salmonids; other sources of mortality = poor water quality, passage through reservoirs and past dams, natural disturbances, etc.).

Jason Dunham, Chris S. Allen, Bruce G. Marcot
Netica .dne format
Marcot, B.G., Allen, C.S., Morey, S., Shively, D. & White, R. (2012) An expert panel approach to assessing potential effects of bull trout reintroduction on federally listed salmonids in the Clackamas River, Oregon. North American Journal of Fisheries Management, 32(3):450-465, Taylor \& Francis
Polar Bear Stressor Model, Phase I (2007-08)

In 2007-08, to inform the U.S. Fish and Wildlife Service decision, whether or not to list polar bears as threatened under the Endangered Species Act (ESA), we projected the status of the world’s polar bears (Ursus maritimus) for decades centered on future years 2025, 2050, 2075, and 2095. We defined four ecoregions based on current and projected sea ice conditions: seasonal ice, Canadian Archipelago, polar basin divergent, and polar basin convergent ecoregions. We incorporated general circulation model projections of future sea ice into a Bayesian network (BN) model structured around the factors considered in ESA decisions. This first-generation (Phase I) BN model combined empirical data, interpretations of data, and professional judgments of one polar bear expert into a probabilistic framework that identifies causal links between environmental stressors and polar bear responses. The BN model projected extirpation of polar bears from the seasonal ice and polar basin divergent ecoregions, where ≈2/3 of the world’s polar bears currently occur, by mid century. Decline in ice habitat was the overriding factor driving the model outcomes.

The Polar Bear Stressor Model, Phase II (2016) can be found here: <abnms.org...>

Bruce G. Marcot, Steven C. Amstrup, David C. Douglas
Netica .dne format
Amstrup, S.C., Marcot, B.G. & Douglas, D.C. (2008) A Bayesian network modeling approach to forecasting the 21st century worldwide status of polar bears. Arctic sea ice decline: observations, projections, mechanisms, and implications, pages 213-268, Wiley Online LibraryAmstrup, S.C., DeWeaver, E.T., Douglas, D.C., Marcot, B.G., Durner, G.M., Bitz, C.M. & Bailey, D.A. (2010) Greenhouse gas mitigation can reduce sea-ice loss and increase polar bear persistence. Nature, 468(7326):955-958, Nature Publishing Group
Recreation Effects on Brown Bears

We integrated results from empirical studies with expert opinion to better understand the potential population-level effects of recreational activities on brown bears. We conducted a literature review and Delphi survey of brown bear experts to better understand the frequencies and types of recreations occurring in bear habitats and their potential effects, and to identify management solutions and research needs. We then developed a Bayesian network model that allows managers to estimate the potential effects of recreational management decisions in bear habitats.

J.K. Fortin, K.D. Rode, G.V. Hilderbrand, J. Wilder, S. Farley, C. Jorgensen, B.G. Marcot
Netica .dne format
Fortin, J.K., Rode, K.D., Hilderbrand, G.V., Wilder, J., Farley, S., Jorgensen, C. & Marcot, B.G. (2016) Impacts of Human Recreation on Brown Bears (Ursus arctos): A Review and New Management Tool. PLoS ONE, 11(1):1-26, Public Library of Science
Hailfinder

A network that uses meteorological data with expert judgements to forecast weather in Northeastern Colorado.

B. Abramson, J. Brown, W. Edwards, A. Murphy, and R. L. Winkler.
Netica .dne format
Abramson, B., Brown, J., Edwards, W., Murphy, A. & Winkler, R.L. (1996) Hailfinder: A Bayesian system for forecasting severe weather. International Journal of Forecasting, 12(1):57-71, Elsevier
Earth Science > Climate
Water

A system used to model waste water treatment and management

F. V. Jensen, U. Kjærulff, K. G. Olesen and J. Pedersen
Netica .dne format
water, waste, treatment, expert
Child

A network modelling symptoms of disease and birth asphyxia in a child.

D. J. Spiegelhalter, R. G. Coewll
Netica .dne format
Spiegelhalter, D.J. & Cowell, R.G. (1992) Learning in probabilistic expert systems. Bayesian statistics, 4:447-465
Medicine
child, illness
Asia

Sample network showing probability of lung cancer given certain factors, alongside some symptoms.

S. Lauritzen, D. Spiegelhalter
HUGIN format
Lauritzen, S.L. & Spiegelhalter, D.J. (1988) Local Computations with Probabilities on Graphical Structures and Their Application to Expert Systems. Journal of the Royal Statistical Society. Series B (Methodological), 50(2):pp. 157-224, Wiley for the Royal Statistical Society
Medicine
asia, lung cancer